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updating augur to version 26.0.0 #1054

Merged
merged 3 commits into from
Nov 9, 2024
Merged

updating augur to version 26.0.0 #1054

merged 3 commits into from
Nov 9, 2024

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erinyoung
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There's a new version of augur!!!

According to the Release Notes, there are some new ways that file names appear and a bug fix.

All I did was update the ARG AUGUR_VER value to 26.0.0.

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

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@kapsakcj kapsakcj left a comment

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will deploy once test pasts. I made a few minor changes to silence warnings, use the recommended CMD format, & updated readme with important dependencies

@kapsakcj kapsakcj merged commit 592a9d3 into master Nov 9, 2024
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@kapsakcj kapsakcj deleted the erin-augur branch November 9, 2024 16:01
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kapsakcj commented Nov 9, 2024

deploy workflow here: https://github.com/StaPH-B/docker-builds/actions/runs/11757586271

thank you for the PR!

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2 participants